What to keep in mind: The framework needs to be written in python, it must have access to certain bioinformatic databases (Protein Data Bank, SWISS-PROT, Uniprot)
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773253/
Pylons project
Web2py
CherryPy
Galaxy
Biomart
Virtuoso
Waf
SCons
Ruffus
Paver
Snakemake
Grok
Nagare
First you need to download Django, this is a framework that has already been designed with python.
Connect django with database.
Steps here: https://docs.djangoproject.com/en/1.10/topics/install/#database-installation
Internalization (i18n) V. Localization (L10n)
Internalization is when you code something but you code it so that it can be adapted into another language. Localization is when you code in a way that can't be adapted into other languages, like if you put slang which is untranslatable into something you write.
Reviews of certain frameworks
https://www.quora.com/What-is-the-best-Python-web-app-framework-And-why
http://softwareengineering.stackexchange.com/questions/144878/understanding-blocking-and-non-blocking-frameworks
https://www.quora.com/What-is-full-stack-integration
You want a non blocking framework because it processes your query immediately.
Non blocking frameworks that can deal with a lot of traffic: Tornado
CMS: Content management system, allows users to add and subtract things on their own without the keeper of the website okaying it, like wikipedia kind of.
Full stack integration: When the coder is very skilled and knows front end and backend tecnologies and also knows multiple languages. So not me.
Bootstrapping is when you can access models, views, and controllers that have already been coded and enter them into your code. Less work.
Django is a good CMS framework to use that is easy to code and has many built in features, and another CMS framework is pyramid except pyramid has fewer built in features and allows for more flexibility when coding. If you really wanna costumise you should use pyramid. Pyramid is good for people who are working on API projects. Django+pyramid both are bootstrapping
Flask is good for simpler projects, good for fast projects, relatively new (2010).
Use cherrypy for smaller projects
Web2py has won the Bossie 2011 award and the 2012 technology of the year award.
Galaxy has confusing instructions and their website is not clear.
https://www.reddit.com/r/programming/comments/71qgc/which_web_framework_for_bioinformatics/
Web2py is simple and straigthfoward
Installing Pyramid:
In order to operate properly, you need to create a virtual environment which allows pyramid to run for a specific app or program rather than a whole system.
1. Go to terminal type in "pip install -U pyramid"
When creating a program you need multiple frameworks, you need a web framework (pyramid), you need a front end framework (HTML kickstart or bootstrap), downloaded Bootstrap,
When picking front and back end frameworks keep in mind community (how many people use it and how many people you can ask for help) and how easy it is to use. Comparison of back end (Laravel), also use PHP frameworks. frameworks https://www.techempower.com/benchmarks/
Person who did something similar to what i want to do:
http://blog.hanfeisun.info/2012/12/cistome-finder/
What languages to code your backend in python however not the front end, Use CSS for front end.
https://www.quora.com/Which-programming-languages-are-front-end-and-which-ones-are-back-end
Front end v back end: From end is the appearance of the program, it is every thing asthetic, backend is the part of the program that takes input and spits out an answer or changes the page.
http://codeup.com/different-types-of-programmers-front-end-vs-back-end/
Frameworks and how they work:
Someone inputs a query on your website, then you take their query and it sends the query to the backend and then it sends the response to the web framework and it is displayed in the front end framework.
NEW FRAMEWORK: WeBIAS
Comparison:
http://www.infoworld.com/article/2622836/application-development/pillars-of-python--six-python-web-frameworks-compared.html
Abstract:
http://lymestats.tumblr.com/page/2
